It appears that this is a bug in the way the pgAdmin stores the window (or
dialog) location to the "pgadmin3 Preferences" file when it exits. Following
is a snippet of a typical problematic window location. Notice that the Top
is a negative number. pgAdmin should never save a negative number. If this
file is edited to contain a positive number (I used "Top=240") the window
appears correctly.
[Properties/Server]
Left=2525
Top=-51
Width=600
Height=552
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