Обсуждение: Queries take long long(10 sec.) time running

Поиск
Список
Период
Сортировка

Queries take long long(10 sec.) time running

От
Andre Lopes
Дата:
Hi,

I have a "vertical" database schema running with an webapp. I query
this database in the webapp rotating the vertical schema with a
view(something like a pivot view)

I know that this type of operation is very expensive, but I have the
webapp running with acceptable response time for 45 days(machine
uptime). Now the queries started to take much much time to execute. I
use a VPS with 512MB memory, and I have Apache2, PostgreSQL 8.4, MySQL
5. The webapp don't have high traffic, have about 700 visits per
day...

I've run "top" and I see that the server is using a lot of swap. I
have ordered the "top" to give me the used swap, the result is this:

[code]
top - 09:24:13 up 49 days, 22:44,  3 users,  load average: 0.15, 0.12, 0.13
Tasks: 123 total,   1 running, 122 sleeping,   0 stopped,   0 zombie
Cpu(s):  0.0%us,  0.0%sy,  0.0%ni, 96.6%id,  3.3%wa,  0.0%hi,  0.0%si,  0.0%st
Mem:    500452k total,   490576k used,     9876k free,      496k buffers
Swap:   524284k total,   343664k used,   180620k free,    32428k cached

  PID USER      PR  NI  VIRT  RES  SHR S %CPU %MEM    TIME+  SWAP
COMMAND
 1881 mysql     20   0  929m 2024    0 S  0.0  0.4 142:11.73 927m
mysqld
11093 root      20   0  275m   56    0 S  0.0  0.0   0:03.46 275m
httpd
19462 apache    20   0  280m 6704 1796 S  0.0  1.3   0:02.00 273m
httpd
11103 apache    20   0  280m 7076 1740 S  0.0  1.4   0:07.80 273m
httpd
11095 apache    20   0  280m 7544 1788 S  0.0  1.5   0:08.70 273m
httpd
11260 apache    20   0  280m 7548 1548 S  0.0  1.5   0:07.94 273m
httpd
11096 apache    20   0  280m 7728 1588 S  0.0  1.5   0:08.45 272m
httpd
12668 apache    20   0  280m 7660 1804 S  0.0  1.5   0:07.30 272m
httpd
11293 apache    20   0  280m 7908 1800 S  0.0  1.6   0:08.59 272m
httpd
12669 apache    20   0  280m 8052 1860 S  0.0  1.6   0:07.69 272m
httpd
11099 apache    20   0  277m 4940 1720 S  0.0  1.0   0:08.64 272m
httpd
11297 apache    20   0  280m 8100 1884 S  0.0  1.6   0:09.00 272m
httpd
11102 apache    20   0  280m 8148 1920 S  0.0  1.6   0:09.34 272m
httpd
12672 apache    20   0  280m 8172 1804 S  0.0  1.6   0:07.62 272m
httpd
12113 apache    20   0  280m 8220 1804 S  0.0  1.6   0:07.87 272m
httpd
11100 apache    20   0  280m 8348 1940 S  0.0  1.7   0:08.70 272m
httpd
12663 apache    20   0  278m 7188 1940 S  0.0  1.4   0:07.66 271m
httpd
19350 apache    20   0  277m 6148 1936 S  0.0  1.2   0:07.23 271m
httpd
11105 apache    20   0  280m 8928 2412 S  0.0  1.8   0:08.08 271m
httpd
 1960 apache    20   0  279m 7912 2108 S  0.0  1.6   0:05.63 271m
httpd
11287 apache    20   0  276m 5176 1936 S  0.0  1.0   0:08.66 271m
httpd
14813 apache    20   0  280m 9336 2424 S  0.0  1.9   0:03.00 271m
httpd
 1729 root      20   0  242m  396  252 S  0.0  0.1   1:14.37 242m
rsyslogd
11304 postgres  20   0  218m  15m  15m S  0.0  3.2   1:34.18 203m
postmaster
11323 postgres  20   0  218m  20m  16m S  0.0  4.2   1:58.70 198m
postmaster
20149 postgres  20   0  218m  22m  17m S  0.0  4.7   0:07.35 195m
postmaster
11360 postgres  20   0  218m  23m  17m S  0.0  4.8   1:14.27 194m
postmaster
11604 postgres  20   0  218m  23m  17m S  0.0  4.9   1:43.92 194m
postmaster
11531 postgres  20   0  218m  24m  17m S  0.0  4.9   2:29.91 194m
postmaster
11628 postgres  20   0  218m  24m  17m S  0.0  5.0   2:46.56 194m
postmaster
11437 postgres  20   0  218m  24m  17m S  0.0  4.9   1:38.11 194m
postmaster
28295 postgres  20   0  188m 3364 2920 S  0.0  0.7   0:00.09 184m
postmaster
13465 postgres  20   0  184m  140   96 S  0.0  0.0  15:07.25 183m
postmaster
13466 postgres  20   0  184m  596  300 S  0.0  0.1   6:14.63 183m
postmaster
13460 postgres  20   0  184m  340  220 S  0.0  0.1   5:14.39 183m
postmaster
13555 postgres  20   0  218m  35m  17m S  0.0  7.3   1:28.89 183m
postmaster
13464 postgres  20   0  184m 3332 3168 S  0.3  0.7  16:38.80 180m
postmaster
11761 postgres  20   0  218m  37m  17m S  0.0  7.7   1:41.28 180m
postmaster
11560 postgres  20   0  218m  38m  17m S  0.0  7.8   1:37.13 180m
postmaster
12914 postgres  20   0  218m  39m  17m S  0.0  8.1   1:49.34 179m
postmaster
11305 postgres  20   0  202m  24m  17m S  0.0  5.0   1:31.30 178m
postmaster
29837 postgres  20   0  188m  10m 8332 S  0.0  2.1   0:01.42 178m
postmaster
12666 postgres  20   0  218m  40m  17m S  0.0  8.4   0:59.64 177m
postmaster
19639 postgres  20   0  216m  41m  17m S  0.0  8.5   1:38.68 175m
postmaster
11373 postgres  20   0  218m  44m  18m S  0.0  9.2   1:39.24 173m
postmaster
12196 postgres  20   0  195m  23m  16m S  0.0  4.8   1:15.28 172m
postmaster
 2313 postgres  20   0  202m  31m  18m S  0.0  6.4   1:09.09 171m
postmaster
14947 postgres  20   0  218m  47m  18m S  0.0  9.7   0:30.29 170m
postmaster
[/code]

This "top" result is ordered by swap.

This is enough information for some clues on how to increase the
response time in queries?


Best Regards,

Re: Queries take long long(10 sec.) time running

От
"Tomas Vondra"
Дата:
On 7 Prosinec 2011, 10:27, Andre Lopes wrote:
> Hi,
>
> I have a "vertical" database schema running with an webapp. I query
> this database in the webapp rotating the vertical schema with a
> view(something like a pivot view)
>
> I know that this type of operation is very expensive, but I have the
> webapp running with acceptable response time for 45 days(machine
> uptime). Now the queries started to take much much time to execute. I
> use a VPS with 512MB memory, and I have Apache2, PostgreSQL 8.4, MySQL
> 5. The webapp don't have high traffic, have about 700 visits per
> day...
>
> I've run "top" and I see that the server is using a lot of swap. I
> have ordered the "top" to give me the used swap, the result is this:

The swap is probably the reason why it's so slow. Anyway top output is
rather useless in this case, especially when ordered by SWAP. We have no
clue which of the processes is the one running the query

Post vmstat output, e.g. 10 lines of "vmstat 1" when the query is running.

Get rid of the swap and read this:
http://wiki.postgresql.org/wiki/Slow_Query_Questions

You should post at least EXPLAIN ANALYZE of the query and info about the
settings of the database (shared buffers etc.).

Tomas


Re: Queries take long long(10 sec.) time running

От
John R Pierce
Дата:
On 12/07/11 1:27 AM, Andre Lopes wrote:
> This is enough information for some clues on how to increase the
> response time in queries?

no.

to optimize queries, you generally need to know what the queries are,
what the relations they are using look like, and get the output of
`explain analyze <your query>;`

some random comments in passing...

  * whats mysql got to do with this?

  * a server running efficiently should be using zero swap.   the fact
    that you have 340MB of swap used implies you need at least twice as
    much physical memory as you have.

  * VPS?  as in virtual server?  so your disk IO is virtualized too?
    this is usually bad news for getting decent database performance.



--
john r pierce                            N 37, W 122
santa cruz ca                         mid-left coast


Re: Queries take long long(10 sec.) time running

От
Andre Lopes
Дата:
Thanks for the replies.

I've done a "vmstat 1", here is the result:

 r  b   swpd   free   buff  cache   si   so    bi    bo   in   cs us sy id wa st
 1  1 342728  21384    264  34940   96    0  1428     0  616  275  1
0 92  7  0
 0  0 342728  15032    312  40008    0    0  5136     0  821  561  0
0 89 10  0
 0  0 342728  15048    312  40072    0    0     0     0   86   51  0
0 100  0  0
 0  0 342728  15792    336  40272    0    0   256     0  561  201  0
0 94  5  0
 0  0 342728  15808    344  40300    0    0     0    36   92   60  0
0 100  0  0
 0  0 342728  15800    344  40304    0    0     0     0  366  171  0
0 100  0  0
 0  0 342728  15800    344  40304    0    0     0     0   67   44  0
0 100  0  0
 0  0 342728  15800    344  40304    0    0     0     0  351  163  0
0 100  0  0
 0  0 342728  15800    344  40304    0    0     0     0   85   52  0
0 100  0  0
 0  1 342728  14808    344  40876    0    0   528    40  459  200  0
0 96  4  0
 0  1 342728  14596    356  41408   32    0   636    88  217   80  0
0 95  5  0
 1  1 340184  10876    356  41428 4144    0  4144     0 1155  715  0
0 82 17  0
 0  3 333176   5460    316  38484 10312   28 10336    32 2158 1474  3
1 75 21  0
 0  2 329480   6192    148  31452 7688 1764  8000  1812 2140 1311  2
1 74 23  0
 1  1 329112   6452    136  30836 4284 2268  5828  2296 1638  799  6
0 75 19  0
 0  3 328832   5972    120  30356 3572 2312  5396  2316 1388  744  4
0 72 24  0
 1  5 331156   5204    116  30656  764 2988  2136  3036  552  391  0
0 68 32  0
 1  0 329708   6524    104  30100 2176  188  3256   192 1586  517  8
0 77 14  0
 0  1 330748   6580    104  30840 1244 1764  5112  1764 1270  509  5
0 70 25  0
 1  1 330584   5888    124  31204 1160 1180  2936  1184 1110  381  7
0 76 17  0
 1  1 332684   5660    200  34564  936 2928 14252  3452 2812 1191  9
1 61 28  0
 1  2 332500   5916    220  34216  860  580  2084  1160 1151  542  4
0 66 30  0
 0  2 332236   5596    228  33712 1636 1088  2444  1132 1665  475 10
1 64 25  0
 1  1 332552   6232    152  32580 1180 1192  4948  1192 1386  504  6
0 61 32  0
 1  0 332748   6496    192  34380   32  204  2128   204 1804  363 13
0 78  9  0
 0  4 334712   6056    244  34644  356 2072  4836  2168 1752  542  8
1 71 21  0
 0  2 335060   5792    260  35132  100  372  1284   372  506  212  0
0 76 24  0
 1  0 335492   6572    280  36352   96  480  2516   576  769  325  1
0 76 23  0
 0  0 335492   6568    280  36432    0    0     0     0  264  120  0
0 100  0  0

Seems my problem is SWAP/IO... I can only solve this putting more RAM
on the machine or it is possible to put down this values only
adjusting some settings?

Best Regards,




On Wed, Dec 7, 2011 at 9:52 AM, John R Pierce <pierce@hogranch.com> wrote:
> On 12/07/11 1:27 AM, Andre Lopes wrote:
>>
>> This is enough information for some clues on how to increase the
>> response time in queries?
>
>
> no.
>
> to optimize queries, you generally need to know what the queries are, what
> the relations they are using look like, and get the output of `explain
> analyze <your query>;`
>
> some random comments in passing...
>
>  * whats mysql got to do with this?
>
>  * a server running efficiently should be using zero swap.   the fact
>   that you have 340MB of swap used implies you need at least twice as
>   much physical memory as you have.
>
>  * VPS?  as in virtual server?  so your disk IO is virtualized too?
>  this is usually bad news for getting decent database performance.
>
>
>
> --
> john r pierce                            N 37, W 122
> santa cruz ca                         mid-left coast
>
>
> --
> Sent via pgsql-general mailing list (pgsql-general@postgresql.org)
> To make changes to your subscription:
> http://www.postgresql.org/mailpref/pgsql-general

Re: Queries take long long(10 sec.) time running

От
"Tomas Vondra"
Дата:
On 7 Prosinec 2011, 11:28, Andre Lopes wrote:
> Thanks for the replies.
>
> Seems my problem is SWAP/IO... I can only solve this putting more RAM
> on the machine or it is possible to put down this values only
> adjusting some settings?

You can set PostgreSQL, MySQL etc. to use less memory - so that it fits
into the RAM. What are the basic config parameters, i.e. shared_buffers,
work_mem etc.?

The question is why it worked fine for 45 days and then it started to slow
down. My bet is that the database grew for some reason (users entering
data, bloat ...). This often triggers sudden performance degradation.

Tomas