Обсуждение: Need help identifying a periodic performance issue.
Hello all,
A description of what you are trying to achieve and what results you expect.:
We’re executing the following copy to fill a table with approximately 5k records, then repeating for a total of 250k records. Normally, this copy executes < 1 second, with the entire set taking a couple of minutes. The problem is not reproducible on command, but usually within a couple of hours of starting some test runs.
COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS ‘|’
But, occasionally we get into a huge performance bottleneck for about 2 hours, where these copy operations are taking 140 seconds or so
Nov 15 22:25:49 sm4u-34 postgres[5799]: [381-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 145326.293 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
One CPU is pegged, the data has been sent over STDIN, so Postgres is not waiting for more, there are no other queries running using this select:
SELECT pid,
client_port,
now() - query_start AS "runtime",
query_start,
datname,
state,
wait_event_type,
query,
usename
FROM pg_stat_activity
WHERE query !~ 'pg_stat_activity' AND
state != 'idle'
ORDER BY state, runtime DESC;
client_port,
now() - query_start AS "runtime",
query_start,
datname,
state,
wait_event_type,
query,
usename
FROM pg_stat_activity
WHERE query !~ 'pg_stat_activity' AND
state != 'idle'
ORDER BY state, runtime DESC;
# pid,client_port,runtime,query_start,datname,state,wait_event_type,query,usename
5799,27136,0 years 0 mons 0 days 0 hours 2 mins 15.534339 secs,2021-11-15 22:23:23.932988 +00:00,tapesystem,active,,"COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'",Administrator
I’m logging statements with pgbadger monitoring the logs. There are no apparent auto-vacuum’s running, nor any vacuums, nor anything at all really. Other select queries around that time frame are executing normally.
We’re coming from PostgreSQL 9.6 on FreeBSD 11 where we did not see this problem, but have a major release upgrade happening. I’m checking to see if this machine was updated or was a fresh install.
From pbgadger:
![](/media/maillist_attaches/pgsql-performance/2021/11/16/3A76761B-3DDD-4A3C-B791-E73107AFC9A2@spectralogic.com/PastedGraphic-1.png)
PostgreSQL version number you are running:
PostgreSQL 13.2 on amd64-portbld-freebsd13.0, compiled by FreeBSD clang version 11.0.1 (git@github.com:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe), 64-bit
How you installed PostgreSQL:
Ports tree, compiled from source.
Changes made to the settings in the postgresql.conf file
name | current_setting | source
---------------------------------+---------------------------------+--------------------
application_name | psql | client
autovacuum_analyze_scale_factor | 0.05 | configuration file
autovacuum_analyze_threshold | 5000 | configuration file
autovacuum_max_workers | 8 | configuration file
autovacuum_vacuum_cost_delay | 5ms | configuration file
autovacuum_vacuum_scale_factor | 0.1 | configuration file
autovacuum_vacuum_threshold | 5000 | configuration file
checkpoint_completion_target | 0.9 | configuration file
checkpoint_timeout | 30min | configuration file
checkpoint_warning | 5min | configuration file
client_encoding | UTF8 | client
commit_delay | 1000 | configuration file
DateStyle | ISO, MDY | configuration file
default_text_search_config | pg_catalog.english | configuration file
dynamic_shared_memory_type | posix | configuration file
effective_cache_size | 58076MB | configuration file
effective_io_concurrency | 200 | configuration file
full_page_writes | off | configuration file
hot_standby | off | configuration file
lc_messages | C | configuration file
lc_monetary | C | configuration file
lc_numeric | C | configuration file
lc_time | C | configuration file
listen_addresses | * | configuration file
log_autovacuum_min_duration | 1s | configuration file
log_checkpoints | on | configuration file
log_connections | on | configuration file
log_destination | syslog | configuration file
log_disconnections | on | configuration file
log_duration | off | configuration file
log_line_prefix | db=%d,user=%u,app=%a,client=%h | configuration file
log_lock_waits | on | configuration file
log_min_duration_sample | 100ms | configuration file
log_min_duration_statement | 1ms | configuration file
log_statement_sample_rate | 0.01 | configuration file
log_temp_files | 0 | configuration file
log_timezone | UTC | configuration file
maintenance_work_mem | 3927MB | configuration file
max_connections | 250 | configuration file
max_parallel_workers_per_gather | 8 | configuration file
max_replication_slots | 0 | configuration file
max_stack_depth | 32MB | configuration file
max_wal_senders | 0 | configuration file
max_wal_size | 50GB | configuration file
max_worker_processes | 8 | configuration file
random_page_cost | 2 | configuration file
shared_buffers | 21679MB | configuration file
synchronous_commit | off | configuration file
temp_buffers | 1309MB | configuration file
TimeZone | UTC | configuration file
track_activities | on | configuration file
track_counts | on | configuration file
update_process_title | off | configuration file
vacuum_cost_delay | 1ms | configuration file
wal_init_zero | off | configuration file
wal_level | minimal | configuration file
wal_recycle | off | configuration file
wal_skip_threshold | 20MB | configuration file
wal_sync_method | fsync | configuration file
wal_writer_delay | 500ms | configuration file
wal_writer_flush_after | 10MB | configuration file
work_mem | 1309MB | configuration file
Operating system and version:
FreeBSD sm4u-34 13.0-STABLE FreeBSD 13.0-STABLE #0: Mon Sep 13 10:11:57 MDT 2021
What program you're using to connect to PostgreSQL:
In house Java 1.8 program, JDBC 42.2.20
Is there anything relevant or unusual in the PostgreSQL server logs?:
Nope
Other info
tapesystem=# SELECT * FROM pg_config();
name | setting
-------------------+---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
BINDIR | /usr/local/bin
DOCDIR | /usr/local/share/doc/postgresql
HTMLDIR | /usr/local/share/doc/postgresql
INCLUDEDIR | /usr/local/include
PKGINCLUDEDIR | /usr/local/include/postgresql
INCLUDEDIR-SERVER | /usr/local/include/postgresql/server
LIBDIR | /usr/local/lib
PKGLIBDIR | /usr/local/lib/postgresql
LOCALEDIR | /usr/local/share/locale
MANDIR | /usr/local/man
SHAREDIR | /usr/local/share/postgresql
SYSCONFDIR | /usr/local/etc/postgresql
PGXS | /usr/local/lib/postgresql/pgxs/src/makefiles/pgxs.mk
CONFIGURE | '--with-libraries=/usr/local/lib' '--with-includes=/usr/local/include' '--enable-thread-safety' '--with-icu' '--disable-debug' '--disable-dtrace' '--without-gssapi' '--without-ldap' '--disable-nls' '--without-pam' '--with-openssl' '--with-system-tzdata=/usr/share/zoneinfo' '--without-libxml' '--with-llvm' '--prefix=/usr/local' '--localstatedir=/var' '--mandir=/usr/local/man' '--infodir=/usr/local/share/info/' '--build=amd64-portbld-freebsd13.0' 'build_alias=amd64-portbld-freebsd13.0' 'CC=cc' 'CFLAGS=-O2 -pipe -fstack-protector-strong -fno-strict-aliasing ' 'LDFLAGS= -L/usr/local/lib -lpthread -L/usr/local/lib -fstack-protector-strong ' 'LIBS=' 'CPPFLAGS=-I/usr/local/include' 'CXX=c++' 'CXXFLAGS=-O2 -pipe -fstack-protector-strong -fno-strict-aliasing ' 'LLVM_CONFIG=/usr/local/bin/llvm-config11' 'CPP=cpp' 'PKG_CONFIG=pkgconf' 'LDFLAGS_SL='
CC | cc
CPPFLAGS | -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include
CFLAGS | -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Werror=vla -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -Wno-unused-command-line-argument -O2 -pipe -fstack-protector-strong -fno-strict-aliasing
CFLAGS_SL | -fPIC -DPIC
LDFLAGS | -L/usr/local/lib -lpthread -L/usr/local/lib -fstack-protector-strong -L/usr/local/llvm11/lib -L/usr/local/lib -Wl,--as-needed -Wl,-R'/usr/local/lib'
LDFLAGS_EX |
LDFLAGS_SL |
LIBS | -lpgcommon -lpgport -lssl -lcrypto -lz -lreadline -lexecinfo -lm
VERSION | PostgreSQL 13.2
hw.model: Intel(R) Xeon(R) CPU E5-2620 v3 @ 2.40GHz
hw.machine: amd64
hw.ncpu: 24
hw.physmem: 137287901184
2 mirrored ZFS SSD disks. Just for fun, we briefly broke the mirror during one of these slowdowns, nothing changed.
These are the system calls made over 30 seconds from Postgres during a slowdown.
getrusage 1
access 3
exit 3
fork 3
getrandom 3
pipe2 3
procctl 3
setsid 3
thr_self 3
__sysctl 5
mmap 6
wait4 6
kill 11
select 14
sigreturn 14
rename 18
getpid 21
fsync 27
pwrite 27
openat 28
sigaction 33
write 50
fstat 56
open 56
sigprocmask 98
read 143
getppid 163
kqueue 163
fcntl 175
close 249
sendto 629
kevent 1069
recvfrom 1192
lseek 3604
fstatat 15894
access 3
exit 3
fork 3
getrandom 3
pipe2 3
procctl 3
setsid 3
thr_self 3
__sysctl 5
mmap 6
wait4 6
kill 11
select 14
sigreturn 14
rename 18
getpid 21
fsync 27
pwrite 27
openat 28
sigaction 33
write 50
fstat 56
open 56
sigprocmask 98
read 143
getppid 163
kqueue 163
fcntl 175
close 249
sendto 629
kevent 1069
recvfrom 1192
lseek 3604
fstatat 15894
Thanks for any assistance.
Best,
Robert
Вложения
On Tue, Nov 16, 2021 at 04:43:25AM +0000, Robert Creager wrote: > We’re executing the following copy to fill a table with approximately 5k records, then repeating for a total of 250k records. Normally, this copy executes < 1 second, with the entire set taking a couple of minutes. The problem is not reproducibleon command, but usually within a couple of hours of starting some test runs. > > COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS ‘|’ > > But, occasionally we get into a huge performance bottleneck for about 2 hours, where these copy operations are taking 140seconds or so > > Nov 15 22:25:49 sm4u-34 postgres[5799]: [381-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1LOG: duration: 145326.293 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id,length, object_id) FROM STDIN WITH DELIMITER AS '|' > I’m logging statements with pgbadger monitoring the logs. There are no apparent auto-vacuum’s running, nor any vacuums,nor anything at all really. Other select queries around that time frame are executing normally. What about checkpoints ? Would you show the "^checkpoint starting" and "^checkpoint complete" logs surrounding a slow COPY ? > We’re coming from PostgreSQL 9.6 on FreeBSD 11 where we did not see this problem, but have a major release upgrade happening. I’m checking to see if this machine was updated or was a fresh install. > PostgreSQL 13.2 on amd64-portbld-freebsd13.0, compiled by FreeBSD clang version 11.0.1 (git@github.com<mailto:git@github.com>:llvm/llvm-project.gitllvmorg-11.0.1-0-g43ff75f2c3fe), 64-bit > > Changes made to the settings in the postgresql.conf file > checkpoint_timeout | 30min | configuration file > log_checkpoints | on | configuration file > log_lock_waits | on | configuration file ... > shared_buffers | 21679MB | configuration file > Operating system and version: > FreeBSD sm4u-34 13.0-STABLE FreeBSD 13.0-STABLE #0: Mon Sep 13 10:11:57 MDT 2021 > These are the system calls made over 30 seconds from Postgres during a slowdown. ... > fsync 27 -- Justin
On Tue, Nov 16, 2021 at 5:43 PM Robert Creager <robertc@spectralogic.com> wrote: > One CPU is pegged, the data has been sent over STDIN, so Postgres is not waiting for more, there are no other queries runningusing this select: So PostgreSQL is eating 100% CPU, with no value shown in wait_event_type, and small numbers of system calls are counted. In that case, is there an interesting user stack that jumps out with a profiler during the slowdown (or the kernel version, stack())? sudo dtrace -n 'profile-99 /arg0/ { @[ustack()] = count(); } tick-10s { exit(0); }'
On Nov 15, 2021, at 10:29 PM, Justin Pryzby <pryzby@telsasoft.com> wrote:This message originated outside your organization.
On Tue, Nov 16, 2021 at 04:43:25AM +0000, Robert Creager wrote:
> We’re executing the following copy to fill a table with approximately 5k records, then repeating for a total of 250k records. Normally, this copy executes < 1 second, with the entire set taking a couple of minutes. The problem is not reproducible on command, but usually within a couple of hours of starting some test runs.
>
> COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS ‘|’
>
> But, occasionally we get into a huge performance bottleneck for about 2 hours, where these copy operations are taking 140 seconds or so
>
> Nov 15 22:25:49 sm4u-34 postgres[5799]: [381-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 145326.293 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
> I’m logging statements with pgbadger monitoring the logs. There are no apparent auto-vacuum’s running, nor any vacuums, nor anything at all really. Other select queries around that time frame are executing normally.
What about checkpoints ?
Would you show the "^checkpoint starting" and "^checkpoint complete" logs
surrounding a slow COPY ?
Sorry, it was late last night, I meant to include the checkpoint info. I didn’t have enough logs around the one I pointed out above, my tail got aborted by a reboot. Working on a log server… From an earlier one:
Nov 5 03:56:28 sm4u-34 postgres[4934]: [2679-1] db=,user=,app=,client= LOG: checkpoint complete: wrote 247 buffers (0.0%); 0 WAL file(s) added, 0 removed, 0 recycled; write=26.279 s, sync=0.002 s, total=26.323 s; sync files=142, longest=0.001 s, average=0.001 s; distance=592 kB, estimate=279087 kB
Nov 5 04:26:03 sm4u-34 postgres[4934]: [2680-1] db=,user=,app=,client= LOG: checkpoint starting: time
Nov 5 04:26:14 sm4u-34 postgres[4934]: [2681-1] db=,user=,app=,client= LOG: checkpoint complete: wrote 115 buffers (0.0%); 0 WAL file(s) added, 0 removed, 0 recycled; write=11.880 s, sync=0.003 s, total=11.885 s; sync files=75, longest=0.001 s, average=0.001 s; distance=541 kB, estimate=251232 kB
Nov 5 04:56:03 sm4u-34 postgres[4934]: [2682-1] db=,user=,app=,client= LOG: checkpoint starting: time
Nov 5 04:56:15 sm4u-34 postgres[4934]: [2683-1] db=,user=,app=,client= LOG: checkpoint complete: wrote 103 buffers (0.0%); 0 WAL file(s) added, 0 removed, 0 recycled; write=11.011 s, sync=0.002 s, total=11.015 s; sync files=74, longest=0.001 s, average=0.001 s; distance=528 kB, estimate=226162 kB
Nov 5 05:15:28 sm4u-34 postgres[59442]: [24-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 1.059 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 05:26:03 sm4u-34 postgres[4934]: [2684-1] db=,user=,app=,client= LOG: checkpoint starting: time
Nov 5 05:26:27 sm4u-34 postgres[4934]: [2685-1] db=,user=,app=,client= LOG: checkpoint complete: wrote 226 buffers (0.0%); 0 WAL file(s) added, 1 removed, 0 recycled; write=24.000 s, sync=0.006 s, total=24.037 s; sync files=122, longest=0.001 s, average=0.001 s; distance=583 kB, estimate=203604 kB
Nov 5 05:56:03 sm4u-34 postgres[4934]: [2686-1] db=,user=,app=,client= LOG: checkpoint starting: time
Nov 5 05:56:24 sm4u-34 postgres[4934]: [2687-1] db=,user=,app=,client= LOG: checkpoint complete: wrote 199 buffers (0.0%); 0 WAL file(s) added, 0 removed, 0 recycled; write=21.212 s, sync=0.004 s, total=21.218 s; sync files=122, longest=0.001 s, average=0.001 s; distance=580 kB, estimate=183302 kB
Nov 5 06:26:03 sm4u-34 postgres[4934]: [2688-1] db=,user=,app=,client= LOG: checkpoint starting: time
Nov 5 06:26:22 sm4u-34 postgres[4934]: [2689-1] db=,user=,app=,client= LOG: checkpoint complete: wrote 178 buffers (0.0%); 0 WAL file(s) added, 0 removed, 0 recycled; write=19.078 s, sync=0.005 s, total=19.084 s; sync files=120, longest=0.001 s, average=0.001 s; distance=563 kB, estimate=165028 kB
Nov 5 06:32:27 sm4u-34 postgres[7728]: [213-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 143318.661 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 06:34:56 sm4u-34 postgres[7728]: [214-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 149175.227 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 06:37:27 sm4u-34 postgres[7728]: [215-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 150440.140 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 06:39:56 sm4u-34 postgres[7728]: [216-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 149521.024 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 06:42:26 sm4u-34 postgres[7728]: [217-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 149182.715 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 06:44:59 sm4u-34 postgres[7728]: [218-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 153734.718 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 06:47:26 sm4u-34 postgres[7728]: [219-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 146371.043 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 06:49:59 sm4u-34 postgres[7728]: [220-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 152996.005 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 06:52:29 sm4u-34 postgres[7728]: [221-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 150094.597 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 06:55:03 sm4u-34 postgres[7728]: [222-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 154446.475 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 06:56:03 sm4u-34 postgres[4934]: [2690-1] db=,user=,app=,client= LOG: checkpoint starting: time
Nov 5 06:57:33 sm4u-34 postgres[7728]: [223-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 149823.562 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 07:00:06 sm4u-34 postgres[7728]: [224-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 152262.349 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 07:02:37 sm4u-34 postgres[7728]: [225-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 151812.262 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 07:05:11 sm4u-34 postgres[7728]: [226-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 152992.509 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 07:07:46 sm4u-34 postgres[7728]: [227-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 155094.565 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 07:10:19 sm4u-34 postgres[7728]: [228-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 153728.503 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 07:12:53 sm4u-34 postgres[7728]: [229-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 153031.260 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 07:15:26 sm4u-34 postgres[7728]: [230-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 153722.550 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 07:17:49 sm4u-34 postgres[4934]: [2691-1] db=,user=,app=,client= LOG: checkpoint complete: wrote 12310 buffers (0.4%); 0 WAL file(s) added, 10 removed, 0 recycled; write=1305.144 s, sync=0.001 s, total=1305.178 s; sync files=92, longest=0.001 s, average=0.001 s; distance=172759 kB, estimate=172759 kB
Nov 5 07:18:00 sm4u-34 postgres[7728]: [231-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 153736.774 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 07:20:25 sm4u-34 postgres[7728]: [232-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 145263.582 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 07:22:53 sm4u-34 postgres[7728]: [233-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 147632.451 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 07:25:22 sm4u-34 postgres[7728]: [234-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 149081.218 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 07:26:03 sm4u-34 postgres[4934]: [2692-1] db=,user=,app=,client= LOG: checkpoint starting: time
Nov 5 07:27:51 sm4u-34 postgres[7728]: [235-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 148655.719 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 07:30:20 sm4u-34 postgres[7728]: [236-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 148677.766 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 07:32:49 sm4u-34 postgres[7728]: [237-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 149493.666 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 07:34:15 sm4u-34 postgres[7728]: [238-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 85751.267 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 07:40:50 sm4u-34 postgres[4934]: [2693-1] db=,user=,app=,client= LOG: checkpoint complete: wrote 8356 buffers (0.3%); 0 WAL file(s) added, 3 removed, 0 recycled; write=887.648 s, sync=0.001 s, total=887.660 s; sync files=51, longest=0.001 s, average=0.001 s; distance=47063 kB, estimate=160189 kB
Nov 5 07:56:03 sm4u-34 postgres[4934]: [2694-1] db=,user=,app=,client= LOG: checkpoint starting: time
Nov 5 08:12:46 sm4u-34 postgres[4934]: [2695-1] db=,user=,app=,client= LOG: checkpoint complete: wrote 9436 buffers (0.3%); 0 WAL file(s) added, 5 removed, 0 recycled; write=1002.606 s, sync=0.002 s, total=1002.627 s; sync files=87, longest=0.001 s, average=0.001 s; distance=77658 kB, estimate=151936 kB
Nov 5 08:26:03 sm4u-34 postgres[4934]: [2696-1] db=,user=,app=,client= LOG: checkpoint starting: time
Nov 5 08:38:03 sm4u-34 postgres[7728]: [317-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 206.436 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 08:38:04 sm4u-34 postgres[7728]: [318-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 222.790 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 08:38:04 sm4u-34 postgres[7728]: [319-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 225.146 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 08:38:04 sm4u-34 postgres[7728]: [320-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 217.768 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 08:38:04 sm4u-34 postgres[7728]: [321-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 221.421 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 08:38:05 sm4u-34 postgres[7728]: [322-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 280.209 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 08:38:05 sm4u-34 postgres[7728]: [323-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 224.838 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 08:38:05 sm4u-34 postgres[7728]: [324-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 232.646 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 08:38:06 sm4u-34 postgres[7728]: [325-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 261.916 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 08:38:06 sm4u-34 postgres[7728]: [326-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 252.336 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 08:38:06 sm4u-34 postgres[7728]: [327-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 231.334 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 08:38:06 sm4u-34 postgres[7728]: [328-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 221.924 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
Nov 5 08:38:07 sm4u-34 postgres[7728]: [329-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 222.862 ms statement: COPY ds3.blob (byte_offset, checksum, checksum_type, id, length, object_id) FROM STDIN WITH DELIMITER AS '|'
> We’re coming from PostgreSQL 9.6 on FreeBSD 11 where we did not see this problem, but have a major release upgrade happening. I’m checking to see if this machine was updated or was a fresh install.
> PostgreSQL 13.2 on amd64-portbld-freebsd13.0, compiled by FreeBSD clang version 11.0.1 (git@github.com<mailto:git@github.com>:llvm/llvm-project.git llvmorg-11.0.1-0-g43ff75f2c3fe), 64-bit
>
> Changes made to the settings in the postgresql.conf file
> checkpoint_timeout | 30min | configuration file
> log_checkpoints | on | configuration file
> log_lock_waits | on | configuration file
...
> shared_buffers | 21679MB | configuration file
> Operating system and version:
> FreeBSD sm4u-34 13.0-STABLE FreeBSD 13.0-STABLE #0: Mon Sep 13 10:11:57 MDT 2021
> These are the system calls made over 30 seconds from Postgres during a slowdown.
...
> fsync 27
--
Justin
On Nov 15, 2021, at 10:50 PM, Thomas Munro <thomas.munro@gmail.com> wrote:This message originated outside your organization.
On Tue, Nov 16, 2021 at 5:43 PM Robert Creager <robertc@spectralogic.com> wrote:One CPU is pegged, the data has been sent over STDIN, so Postgres is not waiting for more, there are no other queries running using this select:
So PostgreSQL is eating 100% CPU, with no value shown in
wait_event_type, and small numbers of system calls are counted. In
that case, is there an interesting user stack that jumps out with a
profiler during the slowdown (or the kernel version, stack())?
sudo dtrace -n 'profile-99 /arg0/ { @[ustack()] = count(); } tick-10s
{ exit(0); }
I setup a monitoring script to do the dtrace stack sampler you sent once a minute on the top CPU consuming Postgres process. Now I wait until we reproduce it.
#!/usr/local/bin/bash
while [[ true ]]; do
DATE=$(date "+%d-%H:%M:%S")
PID=$(top -b | grep postgres | head -n 1 | awk '{print $1}')
echo "${DATE} ${PID}"
dtrace -n 'profile-99 /pid == '$PID'/ { @[ustack()] = count(); } tick-10s { exit(0); }' > dtrace/dtrace_${DATE}.txt
sleep 60
done
Presuming this is the type of output you are expecting:
CPU ID FUNCTION:NAME
0 58709 :tick-10s
postgres`AtEOXact_LargeObject+0x11
postgres`CommitTransaction+0x127
postgres`CommitTransactionCommand+0xf2
postgres`PostgresMain+0x1fef
postgres`process_startup_packet_die
postgres`0x73055b
postgres`PostmasterMain+0xf36
postgres`0x697837
postgres`_start+0x100
`0x80095f008
1
postgres`printtup+0xf3
postgres`standard_ExecutorRun+0x136
postgres`PortalRunSelect+0x10f
postgres`PortalRun+0x1c8
postgres`PostgresMain+0x1f94
postgres`process_startup_packet_die
postgres`0x73055b
postgres`PostmasterMain+0xf36
postgres`0x697837
postgres`_start+0x100
`0x80095f008
1
...
On Wed, Nov 17, 2021 at 11:40 AM Robert Creager <robertc@spectralogic.com> wrote: > Presuming this is the type of output you are expecting: > > CPU ID FUNCTION:NAME > 0 58709 :tick-10s > > > postgres`AtEOXact_LargeObject+0x11 > postgres`CommitTransaction+0x127 > postgres`CommitTransactionCommand+0xf2 > postgres`PostgresMain+0x1fef > postgres`process_startup_packet_die > postgres`0x73055b > postgres`PostmasterMain+0xf36 > postgres`0x697837 > postgres`_start+0x100 > `0x80095f008 > 1 It's the right output format, but isn't /pid == '$PID'/ only going to match one single process called "postgres"? Maybe /execname == "postgres"/ to catch them all? Hopefully it'll be obvious what's going on from an outlier stack with a high sample count. Can also be useful to convert the output to flamegraph format if CPU time is distributed over many distinct stacks.
On Wed, Nov 17, 2021 at 11:51 AM Thomas Munro <thomas.munro@gmail.com> wrote: > It's the right output format, but isn't /pid == '$PID'/ only going to > match one single process called "postgres"? Maybe /execname == > "postgres"/ to catch them all? Oh, duh, it's the top CPU one. Makes sense. Never mind :-)
On Nov 15, 2021, at 10:50 PM, Thomas Munro <thomas.munro@gmail.com> wrote:This message originated outside your organization.
On Tue, Nov 16, 2021 at 5:43 PM Robert Creager <robertc@spectralogic.com> wrote:One CPU is pegged, the data has been sent over STDIN, so Postgres is not waiting for more, there are no other queries running using this select:
So PostgreSQL is eating 100% CPU, with no value shown in
wait_event_type, and small numbers of system calls are counted. In
that case, is there an interesting user stack that jumps out with a
profiler during the slowdown (or the kernel version, stack())?
sudo dtrace -n 'profile-99 /arg0/ { @[ustack()] = count(); } tick-10s
{ exit(0); }
Ok, here is the logs around a dtrace included. I have dtaces every 1m10s, and the two I looked at, the last entry, were the same.
egrep "( checkpoint |COPY ds3.job_entry|COPY ds3.blob|vacuum)” postgres.log
...
Nov 17 06:19:55 sm2u-10 postgres[71885]: [57-1] db=,user=,app=,client= LOG: checkpoint complete: wrote 5843 buffers (0.2%); 1 WAL file(s) added, 2 removed, 0 recycled; write=617.324 s, sync=0.029 s, total=617.42
3 s; sync files=62, longest=0.028 s, average=0.001 s; distance=33368 kB, estimate=213837 kB
Nov 17 06:22:07 sm2u-10 postgres[72628]: [29-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 199171.920 ms statement: COPY ds3.job_entry (blob_id, chunk_id, id, jo
b_id, order_index) FROM STDIN WITH DELIMITER AS '|'
Nov 17 06:24:38 sm2u-10 postgres[71885]: [58-1] db=,user=,app=,client= LOG: checkpoint starting: time
Nov 17 06:25:21 sm2u-10 postgres[72628]: [30-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 193812.868 ms statement: COPY ds3.job_entry (blob_id, chunk_id, id, jo
b_id, order_index) FROM STDIN WITH DELIMITER AS '|'
Nov 17 06:28:39 sm2u-10 postgres[72628]: [31-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 197402.732 ms statement: COPY ds3.job_entry (blob_id, chunk_id, id, jo
b_id, order_index) FROM STDIN WITH DELIMITER AS '|'
Nov 17 06:31:53 sm2u-10 postgres[72628]: [32-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 194173.569 ms statement: COPY ds3.job_entry (blob_id, chunk_id, id, jo
b_id, order_index) FROM STDIN WITH DELIMITER AS '|'
Nov 17 06:35:09 sm2u-10 postgres[72628]: [33-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 195687.516 ms statement: COPY ds3.job_entry (blob_id, chunk_id, id, jo
b_id, order_index) FROM STDIN WITH DELIMITER AS '|'
Nov 17 06:35:46 sm2u-10 postgres[71885]: [59-1] db=,user=,app=,client= LOG: checkpoint complete: wrote 6314 buffers (0.2%); 0 WAL file(s) added, 2 removed, 0 recycled; write=667.531 s, sync=0.260 s, total=667.86
3 s; sync files=54, longest=0.192 s, average=0.005 s; distance=27410 kB, estimate=195194 kB
Nov 17 06:38:22 sm2u-10 postgres[72628]: [34-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 193470.003 ms statement: COPY ds3.job_entry (blob_id, chunk_id, id, jo
b_id, order_index) FROM STDIN WITH DELIMITER AS '|'
Nov 17 06:39:38 sm2u-10 postgres[71885]: [60-1] db=,user=,app=,client= LOG: checkpoint starting: time
Nov 17 06:41:38 sm2u-10 postgres[72628]: [35-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 195634.058 ms statement: COPY ds3.job_entry (blob_id, chunk_id, id, job_id, order_index) FROM STDIN WITH DELIMITER AS '|'
Nov 17 06:44:51 sm2u-10 postgres[72628]: [36-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 192194.098 ms statement: COPY ds3.job_entry (blob_id, chunk_id, id, job_id, order_index) FROM STDIN WITH DELIMITER AS '|'
Nov 17 06:48:01 sm2u-10 postgres[72628]: [37-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 190761.032 ms statement: COPY ds3.job_entry (blob_id, chunk_id, id, job_id, order_index) FROM STDIN WITH DELIMITER AS '|'
Nov 17 06:51:12 sm2u-10 postgres[72628]: [38-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 190892.036 ms statement: COPY ds3.job_entry (blob_id, chunk_id, id, job_id, order_index) FROM STDIN WITH DELIMITER AS '|'
Nov 17 06:52:54 sm2u-10 postgres[71885]: [61-1] db=,user=,app=,client= LOG: checkpoint complete: wrote 7530 buffers (0.3%); 1 WAL file(s) added, 2 removed, 0 recycled; write=795.559 s, sync=0.018 s, total=795.647 s; sync files=59, longest=0.018 s, average=0.001 s; distance=33884 kB, estimate=179063 kB
Nov 17 06:53:07 sm2u-10 postgres[72628]: [39-1] db=tapesystem,user=Administrator,app=PostgreSQL JDBC Driver,client=127.0.0.1 LOG: duration: 114084.629 ms statement: COPY ds3.job_entry (blob_id, chunk_id, id, job_id, order_index) FROM STDIN WITH DELIMITER AS '|'
Nov 17 06:53:24 sm2u-10 postgres[22492]: [7-1] db=,user=,app=,client= LOG: automatic vacuum of table "tapesystem.ds3.s3_object": index scans: 1
Nov 17 06:53:27 sm2u-10 postgres[22492]: [8-1] db=,user=,app=,client= LOG: automatic vacuum of table "tapesystem.ds3.job_entry": index scans: 1
Nov 17 06:54:38 sm2u-10 postgres[71885]: [62-1] db=,user=,app=,client= LOG: checkpoint starting: time
Nov 17 06:55:29 sm2u-10 postgres[22844]: [7-1] db=,user=,app=,client= LOG: automatic vacuum of table "tapesystem.ds3.s3_object": index scans: 1
Nov 17 06:55:33 sm2u-10 postgres[22844]: [8-1] db=,user=,app=,client= LOG: automatic vacuum of table "tapesystem.ds3.blob": index scans: 1
Nov 17 06:55:37 sm2u-10 postgres[22844]: [9-1] db=,user=,app=,client= LOG: automatic vacuum of table "tapesystem.ds3.job_entry": index scans: 1
...
CPU ID FUNCTION:NAME
0 58712 :tick-10s
postgres`CheckForSerializableConflictOutNeeded+0x10
postgres`HeapCheckForSerializableConflictOut+0x35
postgres`heapgetpage+0x255
postgres`heapgettup_pagemode+0x5ad
postgres`heap_getnextslot+0x52
postgres`SeqNext+0x71
postgres`ExecScan+0xc9
postgres`ExecLockRows+0x7b
postgres`standard_ExecutorRun+0x10a
postgres`_SPI_execute_plan+0x524
postgres`SPI_execute_snapshot+0x116
postgres`ri_PerformCheck+0x29e
postgres`RI_FKey_check+0x5d3
postgres`RI_FKey_check_ins+0x21
postgres`ExecCallTriggerFunc+0x105
postgres`afterTriggerInvokeEvents+0x605
postgres`AfterTriggerEndQuery+0x7a
postgres`CopyFrom+0xaca
postgres`DoCopy+0x553
postgres`standard_ProcessUtility+0x5f9
1
postgres`SeqNext+0x80
postgres`ExecScan+0xc9
postgres`ExecLockRows+0x7b
postgres`standard_ExecutorRun+0x10a
postgres`_SPI_execute_plan+0x524
postgres`SPI_execute_snapshot+0x116
postgres`ri_PerformCheck+0x29e
postgres`RI_FKey_check+0x5d3
postgres`RI_FKey_check_ins+0x21
postgres`ExecCallTriggerFunc+0x105
postgres`afterTriggerInvokeEvents+0x605
postgres`AfterTriggerEndQuery+0x7a
postgres`CopyFrom+0xaca
postgres`DoCopy+0x553
postgres`standard_ProcessUtility+0x5f9
postgres`ProcessUtility+0x28
postgres`PortalRunUtility+0x66
postgres`PortalRunMulti+0x13c
postgres`PortalRun+0x1a0
postgres`exec_simple_query+0x623
1
postgres`heapgettup_pagemode+0x150
postgres`heap_getnextslot+0x52
postgres`SeqNext+0x71
postgres`ExecScan+0xc9
postgres`ExecLockRows+0x7b
postgres`standard_ExecutorRun+0x10a
postgres`_SPI_execute_plan+0x524
postgres`SPI_execute_snapshot+0x116
postgres`ri_PerformCheck+0x29e
postgres`RI_FKey_check+0x5d3
postgres`RI_FKey_check_ins+0x21
postgres`ExecCallTriggerFunc+0x105
postgres`afterTriggerInvokeEvents+0x605
postgres`AfterTriggerEndQuery+0x7a
postgres`CopyFrom+0xaca
postgres`DoCopy+0x553
postgres`standard_ProcessUtility+0x5f9
postgres`ProcessUtility+0x28
postgres`PortalRunUtility+0x66
postgres`PortalRunMulti+0x13c
1
postgres`LWLockAcquire+0x1
postgres`heapgettup_pagemode+0x5ad
postgres`heap_getnextslot+0x52
postgres`SeqNext+0x71
postgres`ExecScan+0xc9
postgres`ExecLockRows+0x7b
postgres`standard_ExecutorRun+0x10a
postgres`_SPI_execute_plan+0x524
postgres`SPI_execute_snapshot+0x116
postgres`ri_PerformCheck+0x29e
postgres`RI_FKey_check+0x5d3
postgres`RI_FKey_check_ins+0x21
postgres`ExecCallTriggerFunc+0x105
postgres`afterTriggerInvokeEvents+0x605
postgres`AfterTriggerEndQuery+0x7a
postgres`CopyFrom+0xaca
postgres`DoCopy+0x553
postgres`standard_ProcessUtility+0x5f9
postgres`ProcessUtility+0x28
postgres`PortalRunUtility+0x66
1
postgres`LWLockAcquire+0x1
postgres`ReadBufferExtended+0x9c
postgres`heapgetpage+0x5a
postgres`heapgettup_pagemode+0x5ad
postgres`heap_getnextslot+0x52
postgres`SeqNext+0x71
postgres`ExecScan+0xc9
postgres`ExecLockRows+0x7b
postgres`standard_ExecutorRun+0x10a
postgres`_SPI_execute_plan+0x524
postgres`SPI_execute_snapshot+0x116
postgres`ri_PerformCheck+0x29e
postgres`RI_FKey_check+0x5d3
postgres`RI_FKey_check_ins+0x21
postgres`ExecCallTriggerFunc+0x105
postgres`afterTriggerInvokeEvents+0x605
postgres`AfterTriggerEndQuery+0x7a
postgres`CopyFrom+0xaca
postgres`DoCopy+0x553
postgres`standard_ProcessUtility+0x5f9
1
postgres`heapgetpage+0x292
postgres`heapgettup_pagemode+0x5ad
postgres`heap_getnextslot+0x52
postgres`SeqNext+0x71
postgres`ExecScan+0xc9
postgres`ExecLockRows+0x7b
postgres`standard_ExecutorRun+0x10a
postgres`_SPI_execute_plan+0x524
postgres`SPI_execute_snapshot+0x116
postgres`ri_PerformCheck+0x29e
postgres`RI_FKey_check+0x5d3
postgres`RI_FKey_check_ins+0x21
postgres`ExecCallTriggerFunc+0x105
postgres`afterTriggerInvokeEvents+0x605
postgres`AfterTriggerEndQuery+0x7a
postgres`CopyFrom+0xaca
postgres`DoCopy+0x553
postgres`standard_ProcessUtility+0x5f9
postgres`ProcessUtility+0x28
postgres`PortalRunUtility+0x66
1
postgres`SeqNext+0x83
postgres`ExecScan+0xc9
postgres`ExecLockRows+0x7b
postgres`standard_ExecutorRun+0x10a
postgres`_SPI_execute_plan+0x524
postgres`SPI_execute_snapshot+0x116
postgres`ri_PerformCheck+0x29e
postgres`RI_FKey_check+0x5d3
postgres`RI_FKey_check_ins+0x21
postgres`ExecCallTriggerFunc+0x105
postgres`afterTriggerInvokeEvents+0x605
postgres`AfterTriggerEndQuery+0x7a
postgres`CopyFrom+0xaca
postgres`DoCopy+0x553
postgres`standard_ProcessUtility+0x5f9
postgres`ProcessUtility+0x28
postgres`PortalRunUtility+0x66
postgres`PortalRunMulti+0x13c
postgres`PortalRun+0x1a0
postgres`exec_simple_query+0x623
1
postgres`ExecScanFetch+0x14
postgres`ExecScan+0xc9
postgres`ExecLockRows+0x7b
postgres`standard_ExecutorRun+0x10a
postgres`_SPI_execute_plan+0x524
postgres`SPI_execute_snapshot+0x116
postgres`ri_PerformCheck+0x29e
postgres`RI_FKey_check+0x5d3
postgres`RI_FKey_check_ins+0x21
postgres`ExecCallTriggerFunc+0x105
postgres`afterTriggerInvokeEvents+0x605
postgres`AfterTriggerEndQuery+0x7a
postgres`CopyFrom+0xaca
postgres`DoCopy+0x553
postgres`standard_ProcessUtility+0x5f9
postgres`ProcessUtility+0x28
postgres`PortalRunUtility+0x66
postgres`PortalRunMulti+0x13c
postgres`PortalRun+0x1a0
postgres`exec_simple_query+0x623
1
postgres`standard_ExecutorStart+0x614
postgres`_SPI_execute_plan+0x50f
postgres`SPI_execute_snapshot+0x116
postgres`ri_PerformCheck+0x29e
postgres`RI_FKey_check+0x5d3
postgres`RI_FKey_check_ins+0x21
postgres`ExecCallTriggerFunc+0x105
postgres`afterTriggerInvokeEvents+0x605
postgres`AfterTriggerEndQuery+0x7a
postgres`CopyFrom+0xaca
postgres`DoCopy+0x553
postgres`standard_ProcessUtility+0x5f9
postgres`ProcessUtility+0x28
postgres`PortalRunUtility+0x66
postgres`PortalRunMulti+0x13c
postgres`PortalRun+0x1a0
postgres`exec_simple_query+0x623
postgres`PostgresMain+0x49c
postgres`process_startup_packet_die
postgres`0x73055b
1
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postgres`RI_FKey_check_ins+0x21
postgres`ExecCallTriggerFunc+0x105
postgres`afterTriggerInvokeEvents+0x605
postgres`AfterTriggerEndQuery+0x7a
postgres`CopyFrom+0xaca
postgres`DoCopy+0x553
postgres`standard_ProcessUtility+0x5f9
postgres`ProcessUtility+0x28
11
postgres`heapgetpage+0x1b7
postgres`heapgettup_pagemode+0x5ad
postgres`heap_getnextslot+0x52
postgres`SeqNext+0x71
postgres`ExecScan+0xc9
postgres`ExecLockRows+0x7b
postgres`standard_ExecutorRun+0x10a
postgres`_SPI_execute_plan+0x524
postgres`SPI_execute_snapshot+0x116
postgres`ri_PerformCheck+0x29e
postgres`RI_FKey_check+0x5d3
postgres`RI_FKey_check_ins+0x21
postgres`ExecCallTriggerFunc+0x105
postgres`afterTriggerInvokeEvents+0x605
postgres`AfterTriggerEndQuery+0x7a
postgres`CopyFrom+0xaca
postgres`DoCopy+0x553
postgres`standard_ProcessUtility+0x5f9
postgres`ProcessUtility+0x28
postgres`PortalRunUtility+0x66
13
postgres`ExecStoreBufferHeapTuple+0x5c
postgres`heap_getnextslot+0x49
postgres`SeqNext+0x71
postgres`ExecScan+0xc9
postgres`ExecLockRows+0x7b
postgres`standard_ExecutorRun+0x10a
postgres`_SPI_execute_plan+0x524
postgres`SPI_execute_snapshot+0x116
postgres`ri_PerformCheck+0x29e
postgres`RI_FKey_check+0x5d3
postgres`RI_FKey_check_ins+0x21
postgres`ExecCallTriggerFunc+0x105
postgres`afterTriggerInvokeEvents+0x605
postgres`AfterTriggerEndQuery+0x7a
postgres`CopyFrom+0xaca
postgres`DoCopy+0x553
postgres`standard_ProcessUtility+0x5f9
postgres`ProcessUtility+0x28
postgres`PortalRunUtility+0x66
postgres`PortalRunMulti+0x13c
16
postgres`tts_buffer_heap_getsomeattrs+0xfd
postgres`slot_getsomeattrs_int+0x27
postgres`ExecInterpExpr+0x140
postgres`ExecScan+0x100
postgres`ExecLockRows+0x7b
postgres`standard_ExecutorRun+0x10a
postgres`_SPI_execute_plan+0x524
postgres`SPI_execute_snapshot+0x116
postgres`ri_PerformCheck+0x29e
postgres`RI_FKey_check+0x5d3
postgres`RI_FKey_check_ins+0x21
postgres`ExecCallTriggerFunc+0x105
postgres`afterTriggerInvokeEvents+0x605
postgres`AfterTriggerEndQuery+0x7a
postgres`CopyFrom+0xaca
postgres`DoCopy+0x553
postgres`standard_ProcessUtility+0x5f9
postgres`ProcessUtility+0x28
postgres`PortalRunUtility+0x66
postgres`PortalRunMulti+0x13c
17
postgres`tts_buffer_heap_getsomeattrs+0x36c
postgres`slot_getsomeattrs_int+0x27
postgres`ExecInterpExpr+0x140
postgres`ExecScan+0x100
postgres`ExecLockRows+0x7b
postgres`standard_ExecutorRun+0x10a
postgres`_SPI_execute_plan+0x524
postgres`SPI_execute_snapshot+0x116
postgres`ri_PerformCheck+0x29e
postgres`RI_FKey_check+0x5d3
postgres`RI_FKey_check_ins+0x21
postgres`ExecCallTriggerFunc+0x105
postgres`afterTriggerInvokeEvents+0x605
postgres`AfterTriggerEndQuery+0x7a
postgres`CopyFrom+0xaca
postgres`DoCopy+0x553
postgres`standard_ProcessUtility+0x5f9
postgres`ProcessUtility+0x28
postgres`PortalRunUtility+0x66
postgres`PortalRunMulti+0x13c
34
postgres`HeapTupleSatisfiesVisibility+0x42
postgres`heapgetpage+0x237
postgres`heapgettup_pagemode+0x5ad
postgres`heap_getnextslot+0x52
postgres`SeqNext+0x71
postgres`ExecScan+0xc9
postgres`ExecLockRows+0x7b
postgres`standard_ExecutorRun+0x10a
postgres`_SPI_execute_plan+0x524
postgres`SPI_execute_snapshot+0x116
postgres`ri_PerformCheck+0x29e
postgres`RI_FKey_check+0x5d3
postgres`RI_FKey_check_ins+0x21
postgres`ExecCallTriggerFunc+0x105
postgres`afterTriggerInvokeEvents+0x605
postgres`AfterTriggerEndQuery+0x7a
postgres`CopyFrom+0xaca
postgres`DoCopy+0x553
postgres`standard_ProcessUtility+0x5f9
postgres`ProcessUtility+0x28
55
On Nov 17, 2021, at 10:51 AM, Robert Creager <robertc@spectralogic.com> wrote:On Nov 15, 2021, at 10:50 PM, Thomas Munro <thomas.munro@gmail.com> wrote:This message originated outside your organization.
On Tue, Nov 16, 2021 at 5:43 PM Robert Creager <robertc@spectralogic.com> wrote:One CPU is pegged, the data has been sent over STDIN, so Postgres is not waiting for more, there are no other queries running using this select:
So PostgreSQL is eating 100% CPU, with no value shown in
wait_event_type, and small numbers of system calls are counted. In
that case, is there an interesting user stack that jumps out with a
profiler during the slowdown (or the kernel version, stack())?
sudo dtrace -n 'profile-99 /arg0/ { @[ustack()] = count(); } tick-10s
{ exit(0); }Ok, here is the logs around a dtrace included. I have dtaces every 1m10s, and the two I looked at, the last entry, were the same.
tapesystem=# SELECT name, current_setting(name), source
FROM pg_settings
WHERE source NOT IN ('default', 'override');
name | current_setting | source
---------------------------------+---------------------------------+--------------------
application_name | psql | client
autovacuum_analyze_scale_factor | 0.05 | configuration file
autovacuum_analyze_threshold | 5000 | configuration file
autovacuum_max_workers | 8 | configuration file
autovacuum_vacuum_cost_delay | 5ms | configuration file
autovacuum_vacuum_scale_factor | 0.1 | configuration file
autovacuum_vacuum_threshold | 5000 | configuration file
checkpoint_completion_target | 0.9 | configuration file
checkpoint_timeout | 15min | configuration file
client_encoding | UTF8 | client
DateStyle | ISO, MDY | configuration file
default_text_search_config | pg_catalog.english | configuration file
dynamic_shared_memory_type | posix | configuration file
effective_cache_size | 6546MB | configuration file
effective_io_concurrency | 200 | configuration file
full_page_writes | off | configuration file
hot_standby | off | configuration file
lc_messages | C | configuration file
lc_monetary | C | configuration file
lc_numeric | C | configuration file
lc_time | C | configuration file
listen_addresses | * | configuration file
log_autovacuum_min_duration | 1s | configuration file
log_checkpoints | on | configuration file
log_connections | on | configuration file
log_destination | syslog | configuration file
log_disconnections | on | configuration file
log_duration | off | configuration file
log_line_prefix | db=%d,user=%u,app=%a,client=%h | configuration file
log_lock_waits | on | configuration file
log_min_duration_sample | 500ms | configuration file
log_min_duration_statement | 1s | configuration file
log_statement_sample_rate | 0.01 | configuration file
log_temp_files | 0 | configuration file
log_timezone | UTC | configuration file
maintenance_work_mem | 1964MB | configuration file
max_connections | 250 | configuration file
max_parallel_workers_per_gather | 8 | configuration file
max_replication_slots | 0 | configuration file
max_stack_depth | 32MB | configuration file
max_wal_senders | 0 | configuration file
max_wal_size | 10GB | configuration file
max_worker_processes | 8 | configuration file
random_page_cost | 2 | configuration file
shared_buffers | 22064MB | configuration file
synchronous_commit | off | configuration file
temp_buffers | 654MB | configuration file
TimeZone | UTC | configuration file
track_activities | on | configuration file
track_counts | on | configuration file
update_process_title | off | configuration file
vacuum_cost_delay | 1ms | configuration file
wal_init_zero | off | configuration file
wal_level | minimal | configuration file
wal_recycle | off | configuration file
work_mem | 654MB | configuration file
Justin Pryzby <pryzby@telsasoft.com> writes: > It shows that the process is running FK triggers. Indeed, and doing a seqscan therein. Normally I'd suppose that this reflects a lack of an index, but RI_FKey_check should always be doing something that matches the referenced table's unique constraint, so why isn't it using that? regards, tom lane
On Nov 17, 2021, at 12:00 PM, Justin Pryzby <pryzby@telsasoft.com> wrote:This message originated outside your organization.
On Wed, Nov 17, 2021 at 05:51:05PM +0000, Robert Creager wrote:postgres`HeapTupleSatisfiesVisibility+0x42
postgres`heapgetpage+0x237
postgres`heapgettup_pagemode+0x5ad
postgres`heap_getnextslot+0x52
postgres`SeqNext+0x71
postgres`ExecScan+0xc9
postgres`ExecLockRows+0x7b
postgres`standard_ExecutorRun+0x10a
postgres`_SPI_execute_plan+0x524
postgres`SPI_execute_snapshot+0x116
postgres`ri_PerformCheck+0x29e
postgres`RI_FKey_check+0x5d3
postgres`RI_FKey_check_ins+0x21
postgres`ExecCallTriggerFunc+0x105
postgres`afterTriggerInvokeEvents+0x605
postgres`AfterTriggerEndQuery+0x7a
postgres`CopyFrom+0xaca
postgres`DoCopy+0x553
postgres`standard_ProcessUtility+0x5f9
postgres`ProcessUtility+0x28
55
It shows that the process is running FK triggers.
Would you show \d for the table which is the destination of COPY, and for other
tables to which it has FK constraints.
Two tables being copied into. I chased the first FK tables from the job_entry. I can do the entire thing if you want. There are bunches...
tapesystem=# \d ds3.job_entry
Table "ds3.job_entry"
Column | Type | Collation | Nullable | Default
-------------+---------+-----------+----------+---------
blob_id | uuid | | not null |
chunk_id | uuid | | not null |
id | uuid | | not null |
job_id | uuid | | not null |
order_index | integer | | not null |
Indexes:
"job_entry_pkey" PRIMARY KEY, btree (id)
"job_entry_blob_id_idx" btree (blob_id)
"job_entry_chunk_id_idx" btree (chunk_id)
"job_entry_job_id_blob_id_key" UNIQUE CONSTRAINT, btree (job_id, blob_id)
"job_entry_job_id_idx" btree (job_id)
"job_entry_order_index_chunk_id_key" UNIQUE CONSTRAINT, btree (order_index, chunk_id)
Foreign-key constraints:
"job_entry_blob_id_fkey" FOREIGN KEY (blob_id) REFERENCES ds3.blob(id) ON UPDATE CASCADE ON DELETE CASCADE
"job_entry_chunk_id_fkey" FOREIGN KEY (chunk_id) REFERENCES ds3.job_chunk(id) ON UPDATE CASCADE ON DELETE CASCADE
"job_entry_job_id_fkey" FOREIGN KEY (job_id) REFERENCES ds3.job(id) ON UPDATE CASCADE ON DELETE CASCADE
tapesystem=# \d ds3.job_chunk
Table "ds3.job_chunk"
Column | Type | Collation | Nullable | Default
---------------------------+--------------------------------+-----------+----------+---------
blob_store_state | ds3.job_chunk_blob_store_state | | not null |
chunk_number | integer | | not null |
id | uuid | | not null |
job_id | uuid | | not null |
node_id | uuid | | |
pending_target_commit | boolean | | not null |
read_from_azure_target_id | uuid | | |
read_from_ds3_target_id | uuid | | |
read_from_pool_id | uuid | | |
read_from_s3_target_id | uuid | | |
read_from_tape_id | uuid | | |
Indexes:
"job_chunk_pkey" PRIMARY KEY, btree (id)
"job_chunk_blob_store_state_idx" btree (blob_store_state)
"job_chunk_chunk_number_job_id_key" UNIQUE CONSTRAINT, btree (chunk_number, job_id)
"job_chunk_job_id_idx" btree (job_id)
"job_chunk_node_id_idx" btree (node_id)
"job_chunk_read_from_azure_target_id_idx" btree (read_from_azure_target_id)
"job_chunk_read_from_ds3_target_id_idx" btree (read_from_ds3_target_id)
"job_chunk_read_from_pool_id_idx" btree (read_from_pool_id)
"job_chunk_read_from_s3_target_id_idx" btree (read_from_s3_target_id)
"job_chunk_read_from_tape_id_idx" btree (read_from_tape_id)
Foreign-key constraints:
"job_chunk_job_id_fkey" FOREIGN KEY (job_id) REFERENCES ds3.job(id) ON UPDATE CASCADE ON DELETE CASCADE
"job_chunk_node_id_fkey" FOREIGN KEY (node_id) REFERENCES ds3.node(id) ON UPDATE CASCADE ON DELETE SET NULL
"job_chunk_read_from_azure_target_id_fkey" FOREIGN KEY (read_from_azure_target_id) REFERENCES target.azure_target(id) ON UPDATE CASCADE ON DELETE SET NULL
"job_chunk_read_from_ds3_target_id_fkey" FOREIGN KEY (read_from_ds3_target_id) REFERENCES target.ds3_target(id) ON UPDATE CASCADE ON DELETE SET NULL
"job_chunk_read_from_pool_id_fkey" FOREIGN KEY (read_from_pool_id) REFERENCES pool.pool(id) ON UPDATE CASCADE ON DELETE SET NULL
"job_chunk_read_from_s3_target_id_fkey" FOREIGN KEY (read_from_s3_target_id) REFERENCES target.s3_target(id) ON UPDATE CASCADE ON DELETE SET NULL
"job_chunk_read_from_tape_id_fkey" FOREIGN KEY (read_from_tape_id) REFERENCES tape.tape(id) ON UPDATE CASCADE ON DELETE SET NULL
Referenced by:
TABLE "ds3.job_chunk_azure_target" CONSTRAINT "job_chunk_azure_target_chunk_id_fkey" FOREIGN KEY (chunk_id) REFERENCES ds3.job_chunk(id) ON UPDATE CASCADE ON DELETE CASCADE
TABLE "ds3.job_chunk_ds3_target" CONSTRAINT "job_chunk_ds3_target_chunk_id_fkey" FOREIGN KEY (chunk_id) REFERENCES ds3.job_chunk(id) ON UPDATE CASCADE ON DELETE CASCADE
TABLE "ds3.job_chunk_persistence_target" CONSTRAINT "job_chunk_persistence_target_chunk_id_fkey" FOREIGN KEY (chunk_id) REFERENCES ds3.job_chunk(id) ON UPDATE CASCADE ON DELETE CASCADE
TABLE "ds3.job_chunk_s3_target" CONSTRAINT "job_chunk_s3_target_chunk_id_fkey" FOREIGN KEY (chunk_id) REFERENCES ds3.job_chunk(id) ON UPDATE CASCADE ON DELETE CASCADE
TABLE "ds3.job_entry" CONSTRAINT "job_entry_chunk_id_fkey" FOREIGN KEY (chunk_id) REFERENCES ds3.job_chunk(id) ON UPDATE CASCADE ON DELETE CASCADE
tapesystem=# \d ds3.job
Table "ds3.job"
Column | Type | Collation | Nullable | Default
-----------------------------------------+-------------------------------------------------+-----------+----------+---------
bucket_id | uuid | | not null |
cached_size_in_bytes | bigint | | not null |
chunk_client_processing_order_guarantee | ds3.job_chunk_client_processing_order_guarantee | | not null |
completed_size_in_bytes | bigint | | not null |
created_at | timestamp without time zone | | not null |
id | uuid | | not null |
original_size_in_bytes | bigint | | not null |
priority | ds3.blob_store_task_priority | | not null |
request_type | ds3.job_request_type | | not null |
user_id | uuid | | not null |
truncated | boolean | | not null |
rechunked | timestamp without time zone | | |
error_message | character varying | | |
naked | boolean | | not null |
name | character varying | | not null |
aggregating | boolean | | not null |
minimize_spanning_across_media | boolean | | not null |
truncated_due_to_timeout | boolean | | not null |
implicit_job_id_resolution | boolean | | not null |
verify_after_write | boolean | | not null |
replicating | boolean | | not null |
dead_job_cleanup_allowed | boolean | | not null |
restore | ds3.job_restore | | not null |
Indexes:
"job_pkey" PRIMARY KEY, btree (id)
"ds3_job__bucket_id" btree (bucket_id)
"ds3_job__created_at" btree (created_at)
"ds3_job__name" btree (name)
"ds3_job__user_id" btree (user_id)
Foreign-key constraints:
"job_bucket_id_fkey" FOREIGN KEY (bucket_id) REFERENCES ds3.bucket(id) ON UPDATE CASCADE ON DELETE CASCADE
"job_user_id_fkey" FOREIGN KEY (user_id) REFERENCES ds3."user"(id) ON UPDATE CASCADE
Referenced by:
TABLE "ds3.data_migration" CONSTRAINT "data_migration_get_job_id_fkey" FOREIGN KEY (get_job_id) REFERENCES ds3.job(id) ON UPDATE CASCADE ON DELETE SET NULL
TABLE "ds3.data_migration" CONSTRAINT "data_migration_put_job_id_fkey" FOREIGN KEY (put_job_id) REFERENCES ds3.job(id) ON UPDATE CASCADE ON DELETE SET NULL
TABLE "ds3.job_chunk" CONSTRAINT "job_chunk_job_id_fkey" FOREIGN KEY (job_id) REFERENCES ds3.job(id) ON UPDATE CASCADE ON DELETE CASCADE
TABLE "notification.job_completed_notification_registration" CONSTRAINT "job_completed_notification_registration_job_id_fkey" FOREIGN KEY (job_id) REFERENCES ds3.job(id) ON UPDATE CASCADE ON DELETE CASCADE
TABLE "ds3.job_entry" CONSTRAINT "job_entry_job_id_fkey" FOREIGN KEY (job_id) REFERENCES ds3.job(id) ON UPDATE CASCADE ON DELETE CASCADE
TABLE "notification.s3_object_cached_notification_registration" CONSTRAINT "s3_object_cached_notification_registration_job_id_fkey" FOREIGN KEY (job_id) REFERENCES ds3.job(id) ON UPDATE CASCADE ON DELETE CASCADE
TABLE "notification.s3_object_persisted_notification_registration" CONSTRAINT "s3_object_persisted_notification_registration_job_id_fkey" FOREIGN KEY (job_id) REFERENCES ds3.job(id) ON UPDATE CASCADE ON DELETE CASCADE
tapesystem=# \d ds3.blob
Table "ds3.blob"
Column | Type | Collation | Nullable | Default
---------------+------------------------+-----------+----------+---------
byte_offset | bigint | | not null |
checksum | character varying | | |
checksum_type | security.checksum_type | | |
id | uuid | | not null |
length | bigint | | not null |
object_id | uuid | | not null |
Indexes:
"blob_pkey" PRIMARY KEY, btree (id)
"blob_byte_offset_object_id_key" UNIQUE CONSTRAINT, btree (byte_offset, object_id)
"ds3_blob__object_id" btree (object_id)
Foreign-key constraints:
"blob_object_id_fkey" FOREIGN KEY (object_id) REFERENCES ds3.s3_object(id) ON UPDATE CASCADE
Referenced by:
TABLE "target.blob_azure_target" CONSTRAINT "blob_azure_target_blob_id_fkey" FOREIGN KEY (blob_id) REFERENCES ds3.blob(id) ON UPDATE CASCADE ON DELETE CASCADE
TABLE "temp.blob_azure_target_to_verify" CONSTRAINT "blob_azure_target_to_verify_blob_id_fkey" FOREIGN KEY (blob_id) REFERENCES ds3.blob(id) ON UPDATE CASCADE ON DELETE CASCADE
TABLE "pool.blob_pool" CONSTRAINT "blob_pool_blob_id_fkey" FOREIGN KEY (blob_id) REFERENCES ds3.blob(id) ON UPDATE CASCADE ON DELETE CASCADE
TABLE "target.blob_s3_target" CONSTRAINT "blob_s3_target_blob_id_fkey" FOREIGN KEY (blob_id) REFERENCES ds3.blob(id) ON UPDATE CASCADE ON DELETE CASCADE
TABLE "temp.blob_s3_target_to_verify" CONSTRAINT "blob_s3_target_to_verify_blob_id_fkey" FOREIGN KEY (blob_id) REFERENCES ds3.blob(id) ON UPDATE CASCADE ON DELETE CASCADE
TABLE "tape.blob_tape" CONSTRAINT "blob_tape_blob_id_fkey" FOREIGN KEY (blob_id) REFERENCES ds3.blob(id) ON UPDATE CASCADE ON DELETE CASCADE
TABLE "target.blob_ds3_target" CONSTRAINT "blob_target_blob_id_fkey" FOREIGN KEY (blob_id) REFERENCES ds3.blob(id) ON UPDATE CASCADE ON DELETE CASCADE
TABLE "ds3.degraded_blob" CONSTRAINT "degraded_blob_blob_id_fkey" FOREIGN KEY (blob_id) REFERENCES ds3.blob(id) ON UPDATE CASCADE ON DELETE CASCADE
TABLE "ds3.job_entry" CONSTRAINT "job_entry_blob_id_fkey" FOREIGN KEY (blob_id) REFERENCES ds3.blob(id) ON UPDATE CASCADE ON DELETE CASCADE
TABLE "ds3.multi_part_upload_part" CONSTRAINT "multi_part_upload_part_blob_id_fkey" FOREIGN KEY (blob_id) REFERENCES ds3.blob(id) ON UPDATE CASCADE ON DELETE CASCADE
TABLE "ds3.multi_part_upload" CONSTRAINT "multi_part_upload_placeholder_blob_id_fkey" FOREIGN KEY (placeholder_blob_id) REFERENCES ds3.blob(id) ON UPDATE CASCADE ON DELETE CASCADE
TABLE "pool.obsolete_blob_pool" CONSTRAINT "obsolete_blob_pool_blob_id_fkey" FOREIGN KEY (blob_id) REFERENCES ds3.blob(id) ON UPDATE CASCADE ON DELETE CASCADE
TABLE "tape.obsolete_blob_tape" CONSTRAINT "obsolete_blob_tape_blob_id_fkey" FOREIGN KEY (blob_id) REFERENCES ds3.blob(id) ON UPDATE CASCADE ON DELETE CASCADE
TABLE "target.suspect_blob_azure_target" CONSTRAINT "suspect_blob_azure_target_blob_id_fkey" FOREIGN KEY (blob_id) REFERENCES ds3.blob(id) ON UPDATE CASCADE ON DELETE CASCADE
TABLE "pool.suspect_blob_pool" CONSTRAINT "suspect_blob_pool_blob_id_fkey" FOREIGN KEY (blob_id) REFERENCES ds3.blob(id) ON UPDATE CASCADE ON DELETE CASCADE
TABLE "target.suspect_blob_s3_target" CONSTRAINT "suspect_blob_s3_target_blob_id_fkey" FOREIGN KEY (blob_id) REFERENCES ds3.blob(id) ON UPDATE CASCADE ON DELETE CASCADE
TABLE "tape.suspect_blob_tape" CONSTRAINT "suspect_blob_tape_blob_id_fkey" FOREIGN KEY (blob_id) REFERENCES ds3.blob(id) ON UPDATE CASCADE ON DELETE CASCADE
TABLE "target.suspect_blob_ds3_target" CONSTRAINT "suspect_blob_target_blob_id_fkey" FOREIGN KEY (blob_id) REFERENCES ds3.blob(id) ON UPDATE CASCADE ON DELETE CASCADE
Also, do you have any long-running transactions ?
Not at the time this is happening.
In your first message, you showed no other queries except "idle" ones (not
idle-in-transaction) but I figured I'd ask anyway.
Does your COPY job run in a transaction block ?
Auto-commit is enabled for that connection, so each COPY should be in its own transaction.
You're running pg13.2, so it would be interesting to know if the problem exists
under 13.5.
I’d have to see what it would take to get to 13.5
--
Justin
On Nov 17, 2021, at 2:01 PM, Thomas Munro <thomas.munro@gmail.com> wrote:This message originated outside your organization.
On Thu, Nov 18, 2021 at 8:28 AM Tom Lane <tgl@sss.pgh.pa.us> wrote:Justin Pryzby <pryzby@telsasoft.com> writes:It shows that the process is running FK triggers.
Indeed, and doing a seqscan therein. Normally I'd suppose that
this reflects a lack of an index, but RI_FKey_check should always
be doing something that matches the referenced table's unique
constraint, so why isn't it using that?
I wonder if the reference tables are empty sometimes, and there's an
unlucky sequence of events that results in cached RI plans with seq
scans being used later in the same session after the tables are
populated.
It seems to be important (so far) that we delete a ‘bucket’ in the re-creation of this problem. I’ve included a graphical copy of the schema courtesy of DataGrip. We’re trying to get the problem reproducible more quickly, but at the moment, it takes hours.
![](/media/maillist_attaches/pgsql-performance/2021/11/17/5BAA534E-AECC-4533-951A-0B6D88A070F3@spectralogic.com/ds3.png)
Вложения
> On Nov 17, 2021, at 4:18 PM, Justin Pryzby <pryzby@telsasoft.com> wrote: > > This message originated outside your organization. > > On Wed, Nov 17, 2021 at 09:54:14PM +0000, Robert Creager wrote: > > We are able to move up to Postgres 13.5, in our ports tree, if that would help. We used pg_upgrade to get from 9.6 to13.3, so that should work fine going instead to 13.5. We’re almost branching/releasing our code, so it’s not a good time,but if it may help with this problem, we’ll deal with it. > > To be clear, I have no specfic reason to believe it would help. I figured as much, and told our gang that also. Was looking through the release notes a little, need to finish with 4 andlook at 5. > But it would be silly to chase down a problem that someone already fixed 10 > months ago (the source of this problem, or something else that comes up). Yeah, trying to figure out how feasible it is for us to do quickly. Ok, we have approval, and will be working on an upgradedbuild in the morning. > > In fact I suspect it won't help, and there's an issue with your schema, or > autovacuum, or postgres. Well, if it’s our schema, 9.6 didn’t care about it, doesn’t mean there wasn’t one though, and I understand that completely. So, how do I go about capturing more information for the big brains (you guys) to help figure this out? I have all our resourcesat mine (and hence your) disposal. > > Note that since v10, the version scheme uses only two components, and 13.3 to > 13.5 is a minor release, similar to 9.6.3 to 9.6.5. So you don't need to use > pg_upgrade - just update the binaries. Good, but the previous release of our product was at 9.6, so we’re currently using the pg_upgrade to do that, automated (storageappliance). Just talking out loud, that switching to 13.5 shouldn’t cause us any upgrade issues other than figuringout builds and dependencies and some upgrade testing. And a straight re-run with 13.5 on top of the db should workjust fine. When I talk out loud, I sometimes catch the stupid things I’m missing, and it allows others to point outthe stupid things I’m missing... Best, Robert
On Thu, Nov 18, 2021 at 1:18 PM Robert Creager <robertc@spectralogic.com> wrote: > So, how do I go about capturing more information for the big brains (you guys) to help figure this out? I have all ourresources at mine (and hence your) disposal. As a workaround, does it help if you issue DISCARD PLANS before your COPY jobs, or alternatively start with a fresh connection? I'm guessing that something like this is happening. -- set up the auto_explain extension to show the internal foreign key check queries' plans load 'auto_explain'; set auto_explain.log_nested_statements = true; set auto_explain.log_min_duration = 0; set auto_explain.log_analyze = true; drop table if exists r, s cascade; create table r (i int primary key); create table s (i int references r(i)); -- collect stats showing r as empty analyze r; -- execute RI query 6 times to lock the plan (inserts fail, log shows seq scan) insert into s values (42); insert into s values (42); insert into s values (42); insert into s values (42); insert into s values (42); insert into s values (42); insert into r select generate_series(1, 1000000); -- once more, we still get a seq scan, which is by now a bad idea insert into s values (42); discard plans; -- once more, now we get an index scan insert into s values (42);
> On Nov 17, 2021, at 10:42 PM, Justin Pryzby <pryzby@telsasoft.com> wrote: > > This message originated outside your organization. > > On Thu, Nov 18, 2021 at 04:39:42PM +1300, Thomas Munro wrote: >> On Thu, Nov 18, 2021 at 1:18 PM Robert Creager <robertc@spectralogic.com> wrote: >>> So, how do I go about capturing more information for the big brains (you guys) to help figure this out? I have all ourresources at mine (and hence your) disposal. >> >> As a workaround, does it help if you issue DISCARD PLANS before your >> COPY jobs, or alternatively start with a fresh connection? I'm I can certainly give that a try. > It also seems to work if one does SET plan_cache_mode=force_custom_plan; > > Robert might try that, either in postresql.conf, or SET in the client that's > doing COPY. Which would be better? Discard plans or forcing custom plans? Seems like wrapping a copy might be better than the Postgres.confchange as that would affect all statements. What kind of performance hit would we be taking with that do youestimate? Microseconds per statement? Yeah, hard to say, depends on hardware and such. Would there be any benefit overallto doing that? Forcing the replan? Best, Robert
On Fri, Nov 19, 2021 at 6:03 AM Robert Creager <robertc@spectralogic.com> wrote: > Which would be better? Discard plans or forcing custom plans? Seems like wrapping a copy might be better than the Postgres.confchange as that would affect all statements. What kind of performance hit would we be taking with that do youestimate? Microseconds per statement? Yeah, hard to say, depends on hardware and such. Would there be any benefit overallto doing that? Forcing the replan? Just to understand what's going on, it'd be interesting to know if the problem goes away if you *just* inject the DISCARD PLANS statement before running your COPYs, but if that doesn't help it'd also be interesting to know what happens if you ANALYZE each table after each COPY. Are you running any explicit ANALYZE commands? How long do your sessions/connections live for? I'm wondering if the thing that changed between 9.6 and 13 might be the heuristics for when auto vacuum's background ANALYZE is triggered, creating the unlucky timing required to get your system to this state occasionally. For a while now I have been wondering how we could teach the planner/stats system about "volatile" tables (as DB2 calls them), that is, ones that are frequently empty, which often come up in job queue workloads. I've seen problems like this with user queries (I used to work on big job queue systems across different relational database vendors, which is why I finished up writing the SKIP LOCKED patch for 9.5), but this is the first time I've contemplated FK check queries being negatively affected by this kind of stats problem. I don't have a good concrete idea, though (various dumb ideas: don't let auto analyze run on an empty table if it's marked VOLATILE, or ignore apparently empty stats on tables marked VOLATILE (and use what?), ...).
Thomas Munro <thomas.munro@gmail.com> writes: > I'm wondering if the thing that changed between 9.6 and 13 might be > the heuristics for when auto vacuum's background ANALYZE is triggered, > creating the unlucky timing required to get your system to this state > occasionally. > For a while now I have been wondering how we could teach the > planner/stats system about "volatile" tables (as DB2 calls them), that > is, ones that are frequently empty, which often come up in job queue > workloads. I've seen problems like this with user queries (I used to > work on big job queue systems across different relational database > vendors, which is why I finished up writing the SKIP LOCKED patch for > 9.5), but this is the first time I've contemplated FK check queries > being negatively affected by this kind of stats problem. I don't have > a good concrete idea, though (various dumb ideas: don't let auto > analyze run on an empty table if it's marked VOLATILE, or ignore > apparently empty stats on tables marked VOLATILE (and use what?), > ...). Hmm. If this complaint were about v14 rather than v13, I'd be wondering whether 3d351d916 was what made things worse. But in v13, if the table does go to empty (zero length) and ANALYZE happens to see that state, we should end up back at the planner's "minimum ten pages" heuristic, which likely would be enough to prevent choice of a seqscan. OTOH, if the analyzed state is "empty but has a couple of pages", it looks like that could provoke a seqscan. This is all guesswork though, since we don't know quite what's happening on Robert's system. It might be worth setting "log_autovacuum_min_duration = 0" (either globally, or as a reloption on the relevant tables), and seeing if there seems to be any correlation between autovacuum/autoanalyze activity and the occurrences of poor plan choices. regards, tom lane
On Nov 18, 2021, at 2:08 PM, Thomas Munro <thomas.munro@gmail.com> wrote:This message originated outside your organization.
On Fri, Nov 19, 2021 at 6:03 AM Robert Creager <robertc@spectralogic.com> wrote:Which would be better? Discard plans or forcing custom plans? Seems like wrapping a copy might be better than the Postgres.conf change as that would affect all statements. What kind of performance hit would we be taking with that do you estimate? Microseconds per statement? Yeah, hard to say, depends on hardware and such. Would there be any benefit overall to doing that? Forcing the replan?
Just to understand what's going on, it'd be interesting to know if the
problem goes away if you *just* inject the DISCARD PLANS statement
before running your COPYs, but if that doesn't help it'd also be
I’m doing that now, “SET plan_cache_mode=force_custom_plan” before the copy, then auto after the copy.
interesting to know what happens if you ANALYZE each table after each
COPY. Are you running any explicit ANALYZE commands? How long do
your sessions/connections live for?
No explicit analyze happening. I’m not super familiar with this code base, but a bit of looking confirmed what I thought, they served via connection pool and appear to live for the life of the app, which could be months.
After this test (tomorrow likely) I can try the explicit ANALYZE after the copy completes.
Best,
Robert
> On Nov 18, 2021, at 2:42 PM, Tom Lane <tgl@sss.pgh.pa.us> wrote: > > This is all guesswork though, since we don't know quite what's > happening on Robert's system. It might be worth setting > "log_autovacuum_min_duration = 0" (either globally, or as a > reloption on the relevant tables), and seeing if there seems > to be any correlation between autovacuum/autoanalyze activity > and the occurrences of poor plan choices. I’ve changed the log duration globally, and am also using the plan_cache_mode=force_custom_plan suggested by Justin. Best, Robert
On Nov 18, 2021, at 2:42 PM, Tom Lane <tgl@sss.pgh.pa.us> wrote:This message originated outside your organization.
Thomas Munro <thomas.munro@gmail.com> writes:
This is all guesswork though, since we don't know quite what's
happening on Robert's system. It might be worth setting
"log_autovacuum_min_duration = 0" (either globally, or as a
reloption on the relevant tables), and seeing if there seems
to be any correlation between autovacuum/autoanalyze activity
and the occurrences of poor plan choices.
Ok, doing a SET plan_cache_mode=force_custom_plan before the COPY and resetting it after appears to fix the problem. We’re going to run it over the weekend to make sure.
So, I thank you very much for all your help.
I have logs with autovacuum=0 and dtrace output every minute, but suspect that won’t help you now. Would you like me to remove the fix next week and reproduce the issue with the same config to provide more information for trouble shooting? I may be able get a SSH session into a live system, I’d have to check with IT to see if that’s possible/allowed.
Best,
Robert
On Nov 19, 2021, at 11:47 AM, Robert Creager <robertc@spectralogic.com> wrote:On Nov 18, 2021, at 2:42 PM, Tom Lane <tgl@sss.pgh.pa.us> wrote:This message originated outside your organization.
Thomas Munro <thomas.munro@gmail.com> writes:
This is all guesswork though, since we don't know quite what's
happening on Robert's system. It might be worth setting
"log_autovacuum_min_duration = 0" (either globally, or as a
reloption on the relevant tables), and seeing if there seems
to be any correlation between autovacuum/autoanalyze activity
and the occurrences of poor plan choices.Ok, doing a SET plan_cache_mode=force_custom_plan before the COPY and resetting it after appears to fix the problem. We’re going to run it over the weekend to make sure.
We are at it again. I have a DELETE operation that’s taking 48 minutes so far. I had set plan_cache_mode = force_custom_plan for the entire server before this happened, as we started seeing the COPY slowdown again. I have dtrace information again, but primarily shows the nested scan operation.
pid,client_port,runtime,query_start,datname,state,wait_event_type,query,usename
40665,15978,0 years 0 mons 0 days 0 hours 48 mins 49.62347 secs,2021-11-24 20:13:30.017188 +00:00,tapesystem,active,,DELETE FROM ds3.blob WHERE EXISTS (SELECT * FROM ds3.s3_object WHERE id = ds3.blob.object_id AND (bucket_id = $1)),Administrator
So how do we avoid this query plan? Do we need to start doing explicit analyzes after every delete?
EXPLAIN DELETE
FROM ds3.blob
WHERE EXISTS(SELECT * FROM ds3.s3_object WHERE id = ds3.blob.object_id AND (bucket_id = '85b9e793-2141-455c-a752-90c2346cdfe1'));
250k objects in blob
256k objects in s3_object
QUERY PLAN
Delete on blob (cost=10117.05..16883.09 rows=256002 width=12)
-> Hash Join (cost=10117.05..16883.09 rows=256002 width=12)
Hash Cond: (blob.object_id = s3_object.id)
-> Seq Scan on blob (cost=0.00..6094.02 rows=256002 width=22)
-> Hash (cost=6917.02..6917.02 rows=256002 width=22)
-> Seq Scan on s3_object (cost=0.00..6917.02 rows=256002 width=22)
Filter: (bucket_id = '8a988c6c-ef98-465e-a148-50054c739212'::uuid)
’Normal’ explain, very few objects with that bucket.
QUERY PLAN
Delete on blob (cost=0.71..6.76 rows=1 width=12)
-> Nested Loop (cost=0.71..6.76 rows=1 width=12)
-> Index Scan using ds3_s3_object__bucket_id on s3_object (cost=0.29..2.31 rows=1 width=22)
Index Cond: (bucket_id = '85b9e793-2141-455c-a752-90c2346cdfe1'::uuid)
-> Index Scan using ds3_blob__object_id on blob (cost=0.42..4.44 rows=1 width=22)
Index Cond: (object_id = s3_object.id)
I forgot, I had reloaded postgres, but had not re-started our app, so the connections wouldn’t have that plan setting on them. Re-doing now.
On Nov 24, 2021, at 2:13 PM, Robert Creager <robertc@spectralogic.com> wrote:On Nov 19, 2021, at 11:47 AM, Robert Creager <robertc@spectralogic.com> wrote:On Nov 18, 2021, at 2:42 PM, Tom Lane <tgl@sss.pgh.pa.us> wrote:This message originated outside your organization.
Thomas Munro <thomas.munro@gmail.com> writes:
This is all guesswork though, since we don't know quite what's
happening on Robert's system. It might be worth setting
"log_autovacuum_min_duration = 0" (either globally, or as a
reloption on the relevant tables), and seeing if there seems
to be any correlation between autovacuum/autoanalyze activity
and the occurrences of poor plan choices.Ok, doing a SET plan_cache_mode=force_custom_plan before the COPY and resetting it after appears to fix the problem. We’re going to run it over the weekend to make sure.We are at it again. I have a DELETE operation that’s taking 48 minutes so far. I had set plan_cache_mode = force_custom_plan for the entire server before this happened, as we started seeing the COPY slowdown again. I have dtrace information again, but primarily shows the nested scan operation.pid,client_port,runtime,query_start,datname,state,wait_event_type,query,usename40665,15978,0 years 0 mons 0 days 0 hours 48 mins 49.62347 secs,2021-11-24 20:13:30.017188 +00:00,tapesystem,active,,DELETE FROM ds3.blob WHERE EXISTS (SELECT * FROM ds3.s3_object WHERE id = ds3.blob.object_id AND (bucket_id = $1)),AdministratorSo how do we avoid this query plan? Do we need to start doing explicit analyzes after every delete?EXPLAIN DELETE
FROM ds3.blob
WHERE EXISTS(SELECT * FROM ds3.s3_object WHERE id = ds3.blob.object_id AND (bucket_id = '85b9e793-2141-455c-a752-90c2346cdfe1'));
250k objects in blob
256k objects in s3_object
QUERY PLAN
Delete on blob (cost=10117.05..16883.09 rows=256002 width=12)
-> Hash Join (cost=10117.05..16883.09 rows=256002 width=12)
Hash Cond: (blob.object_id = s3_object.id)
-> Seq Scan on blob (cost=0.00..6094.02 rows=256002 width=22)
-> Hash (cost=6917.02..6917.02 rows=256002 width=22)
-> Seq Scan on s3_object (cost=0.00..6917.02 rows=256002 width=22)
Filter: (bucket_id = '8a988c6c-ef98-465e-a148-50054c739212'::uuid)
’Normal’ explain, very few objects with that bucket.
QUERY PLAN
Delete on blob (cost=0.71..6.76 rows=1 width=12)
-> Nested Loop (cost=0.71..6.76 rows=1 width=12)
-> Index Scan using ds3_s3_object__bucket_id on s3_object (cost=0.29..2.31 rows=1 width=22)
Index Cond: (bucket_id = '85b9e793-2141-455c-a752-90c2346cdfe1'::uuid)
-> Index Scan using ds3_blob__object_id on blob (cost=0.42..4.44 rows=1 width=22)
Index Cond: (object_id = s3_object.id)
> On Nov 24, 2021, at 4:15 PM, Justin Pryzby <pryzby@telsasoft.com> wrote:
>
> This message originated outside your organization.
>
> On Wed, Nov 24, 2021 at 10:44:12PM +0000, Robert Creager wrote:
>> I forgot, I had reloaded postgres, but had not re-started our app, so the connections wouldn’t have that plan setting on them. Re-doing now.
>
> Are you sure? GUC changes should be applied for existing sessions, right ?
>
> Would you send the logs surrounding the slow COPY ?
> Specifically including the autovacuum logs.
Here are the log lines 5 minutes leading up to the 2min copy operation happening. There is no vacuum activity. The previous auto vacuum happened 20 minutes earlier on a different table.
>
>> We are at it again. I have a DELETE operation that’s taking 48 minutes so far.
>
> Before, you had slow COPY due to FKs. Now you have a slow DELETE, which you
> only alluded to before.
Yeah, I had not been able to reproduce it previously with logging/dtracing enabled. And I was able to look at the query plan as I saw it happening.
And we’ve run across another problem query, which is also hitting that ds3.blob table.
INFO Nov 25 05:30:05,787 [WorkLogger] | Still in progress after 30 minutes: [IomDriverWorker] SQL: SELECT * FROM ds3.s3_object_property WHERE (key = 'x-amz-meta-o-spectra-backup-start-date' AND EXISTS (SELECT * FROM ds3.s3_object WHERE id = ds3.s3_object_property.object_id AND ((EXISTS (SELECT * FROM ds3.bucket WHERE id = ds3.s3_object.bucket_id AND (name LIKE 'Spectra%')) AND NOT EXISTS (SELECT * FROM ds3.blob WHERE object_id = ds3.s3_object.id AND (EXISTS (SELECT * FROM ds3.job... (MonitoredWorkManager$WorkLogger.run:84)
>
>> So how do we avoid this query plan? Do we need to start doing explicit analyzes after every delete?
>
> If your DELETE is deleting the entire table, then I think you should VACUUM
> anyway (or else the next inserts will bloat the table).
We’re not deleting the entire table necessarily, we don’t know, customer driven thing. In general, the COPY table used will not see a lot of deletes, this in from the test group, which is deleting a lot of data.
>
> But first, I believe Thomas was suggesting to put plan_cache_mode back to its
> default, and (for testing purposes) try using issue DISCARD PLANS.
Ok, I’ll do that now and see what happens with the COPY.
>
> On Fri, Nov 19, 2021 at 10:08:02AM +1300, Thomas Munro wrote:
>> Just to understand what's going on, it'd be interesting to know if the
>> problem goes away if you *just* inject the DISCARD PLANS statement
>> before running your COPYs, but if that doesn't help it'd also be
>> interesting to know what happens if you ANALYZE each table after each
>> COPY. Are you running any explicit ANALYZE commands? How long do
>> your sessions/connections live for?
>
> --
> Justin
>